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Horse Genome Project | Broad Institute
The domestic horse, Equus caballus, is a member of the mammalian order Perrisodactyla. The horse genome is being sequenced for two reasons. It is expected to help identify functional genome features common to all mammals, and it will serve as a tool for researchers to better understand the diseases that affect equines.The recent creation of modern breeds and the presence of specific diseases ...
UCSC Genome Browser Downloads
Sequence and Annotation Downloads. This page contains links to sequence and annotation data downloads for the genome assemblies featured in the UCSC Genome Browser. Table downloads are also available via the Genome Browser FTP server. For quick access to the most recent assembly of each genome, see the current genomes directory. This directory ...
International Society for Animal Genetics (ISAG ...
We developed a targeted ~500 SNP Equine GBS panel consisting of ISAG parentage verification SNPs and an additional SNP panel for Sire/Dam allocation. The panel design utilised latest reference genome build - EquCab3.0, with corrections for markers mapping to previous reference genomes EquCab1 and EquCab2.
Ultraconserved Elements: Analyses of Dosage Sensitivity ...
pairwise alignments of human with horse (equCab1), cow (bosTau2), opossum (monDom4), and platypus (ornAna1). In these cases, alignments were available only with human genome hg18, and thus the UCEs identiÞed were mapped back to hg17 with the liftOver utility provided by UCSC. To separate UCEs into intergenic, intronic, and exonic
Association of sequence variants in CKM (creatine kinase ...
Before the availability of the first assembly (EquCab1.0) of the horse (Equus caballus) genome (February 2007), PCR primers were either: 1) chosen from published papers; or 2) designed from available sequences in GenBank and the Ensembl Trace Archive (Wheeler et al. 2008).
Genome Browser FAQ
Return to FAQ Table of Contents. List of UCSC genome releases How do UCSC's release numbers correspond to those of other organizations, such as NCBI?
An integrative genomics approach identifies Hypoxia ...
The transcription factor Hypoxia-inducible factor 1 (HIF-1) plays a central role in the transcriptional response to oxygen flux. To gain insight into the molecular pathways regulated by HIF-1, it is essential to identify the downstream-target genes. We report here a strategy to identify HIF-1-target ...
PhastCons Vert30, Genome Conservation Scores
PhastCons Vert30, Genome Conservation Scores Description. This track shows multiple alignments of 30 vertebrate species and measurements of evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package, for all species (vertebrate) and two subsets (euarchontoglire and placental mammal).
Genome Additions Master Ticket · Issue #1470 ...
GitHub is home to over 36 million developers working together to host and review code, manage projects, and build software together ...
Galaxy - UABgrid Documentation
Overview . The UAB Galaxy platform for experimental biology and comparative genomics is designed to help you analyze multiple alignments, compare genomic annotations, profile metagenomic samples and more from your web browser.